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# UW Advanced Research Computing Center <br> Welcome to the UW ARCC (Advanced Research Computing Center) Wiki
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## How to Stay Connected
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<div align="center">
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| Contact Medium | Info |
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| :--- | :--- |
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| E-Mail: | arcc-help@uwyo.edu |
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| Service Portal: | Request our services or request help: https://arccwiki.atlassian.net/servicedesk/customer/portals |
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| Office Hours: | Hosted virtually twice a week Mon 10:30am-12:30pm and Tues 11am-1pm over Zoom |
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| Website: | https://uwyo.edu/arcc |
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| ARCC Announcements: | [News & Announcements] (https://www.uwyo.edu/arcc/news/) |
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| ARCC Policies: | [ARCC Administrative & Operational Policies] (https://www.uwyo.edu/arcc/policy.html) |
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| Mailing List: | https://lists.uwyo.edu/mailman/listinfo/arcc-announce |
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***
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## ARCC Technical Documentation
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<div align = "left">
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The Advanced Research Computing Center is the primary research computing center at the University of Wyoming. This wiki is intended to provide user-focused, detailed technical documentation and instructions for how to utilize research computing resources available to the University of Wyoming research community. The General ARCC Service Documentation Section on the left contains documentation with overviews on all of our resources, and how to use them. The ARCC Cluster Documentation section on the right contains documentation and how-tos associated with ARCC cluster(s) i.e., Medicinebow. Please contact arcc-help@uwyo.edu if you notice any of our Wiki documentation is outdated, incorrect or you’re unable to find what you need.
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<table>
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<tr align="center" justify-content="center" font size=18>
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<th colspan="2">
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Can't Find what you're looking for? Search our Wiki: <br>
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Search Box
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</th>
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</tr>
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<tr align="center" justify-content="center" font size=16>
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<th> General ARCC Service Documentation <br> New to ARCC? <a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2655780871">ARCC's Getting Started Overview</a> </th>
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<th> ARCC Cluster Documentation <br> New to HPC? <a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2545319937">ARCC's Beginners Guide to HPC</a> </th>
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</tr>
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<tbody>
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<tr>
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<td><b>ARCC System and Services Overviews</b></td>
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<td><a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554527745"><b>HPC System Overview</b></a></td>
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</tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615476240"><b>ARCC Primary Services</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615476240"><b>Medicinebow: </b> ARCC's Primary Cluster</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551513091"><b>Alcova: </b> Traditional Research Data Storage</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551709714"><b>Pahfinder: </b> Cloud-like S3 Bucket Storage</a><br>
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<a href="https://wwwdev.uwyo.edu/arcc/services/usersupport1.html"><b>User Support: </b> Getting Help</a><br>
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<a href="https://wwwdev.uwyo.edu/arcc/services/usersupport1.html"><b>CRST: </b> Computational Research Software Team</a><br>
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<a href="https://wwwdev.uwyo.edu/arcc/services/misc.html"><b>Specialized Services</b></a><br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615476240"><b>Medicinebow: </b> ARCC's Primary Cluster</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2611544065">Architecture and Hardware Summary</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616655873">Filesystem Structure</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616688641">Software List</a><br>
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<a href="https://msi.umn.edu/our-resources/slurm-scheduler/pbs-to-slurm-conversion"><b>PBS To Slurm: </b> Commannd Translation Cheatsheet</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2134540418/Intro+to+Linux+Command-Line+The+File+System#02-Using-the-Terminal">Getting Familiar with Linux Command Line</a><br>
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</td>
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</tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656108553"><b>Accounts & Access Configuration</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656108553/ARCC+Account+Management#Get-Access-to-ARCC-Services">Getting Access to ARCC Services</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656108553/ARCC+Account+Management#Initial-Account-%26-Access-Configuration">Initial Account Configuration</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551709714">Non-UW (ARCC-Only) Account Setup</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656108553/ARCC+Account+Management#Accessing-ARCC-Resources">Accessing Your ARCC Project & Resources</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2735898625">Configure MobaXTerm (Windows Specific)</a><br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921"><b>Logging In</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615476240">Log into Medicinebow from a browser(UWYO User Accounts)</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552201217">Log into Medicinebow from a browser(non-UWYO User Accounts)</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841939">Configure SSH Logins from your personal device</a><br>
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</td>
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</tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554560514/Data+Storage+Systems"><b>Research Data Storage</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2626191361">Mapping/Mounting as a Network Drive - SMB/CIFS</a> (Alcova)<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2626191361">Using Globus Online</a> (Alcova/Medicinebow/Pathfinder)<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551480321">Using Cloudberry</a> (Pathfinder)<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549842317">Using Cyberduck</a> (Alcova/Medicinebow/Pathfinder)<br>
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<a href="https://wwwdev.uwyo.edu/arcc/services/usersupport1.html">Using RClone</a>(
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656993416">Medicinebow</a>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2655584371">Pathfinder</a>/Alcova)<br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921"><b>HPC Web Applications (On Demand)</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2550956040/Running+Interactive+Jobs+with+OnDemand">Run Interactive Jobs with OnDemand</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2189623297">Launch R Studio from OnDemand</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2205646897/Jupyter+with+OnDemand">Using Jupyter</a><br>
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</td>
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</tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2742517784"><b>Frequently Referenced Pages</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554527745">ARCC FAQs</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2686517257/HPC+Glossary+Terminology">Glossary & Terms</a><br>
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<a href="http://www.uwyo.edu/arcc/news/index.html">Recent News & Announcements</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2743205890/Known+Issues">Known Issues</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2624847873">ARCC Facilities Statement</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2735865908">Citing ARCC</a><br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551578625"><b>Running Jobs: SLURM Job Scheduler</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551578642/Submitting+Batch+Jobs+from+Command+Line">Submit Batch Jobs from Command Line</a> (Alcova)<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2640281601/Running+Jobs+Batch+Script+Basics+and+Common+Terms">Running Jobs: Batch Script Basics and Common Terms</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551709697/Run+Interactive+Jobs+from+Command+Line">Run Interactive Jobs from Command Line</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549842317">Job Output & Logging</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549842497"><b>Query the HPC System & Job Information</b></a><br>
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</td>
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</tr>
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<tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552004609"><b>Investments</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/1778090224">Investment Allocations</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552004704">Node Purchase Estimates</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552004681/Investment+FAQs">Investment FAQs</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2583134231"><b>Specialized Systems and Services</b></a><br>
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External HPC Support - Pending<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551971842/GitLab">Gitlab</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2626191361">Globus</a><br>
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Linux Client Support - Pending<br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2742517761">Gracehopper Nodes</a><br>
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Colo-Systems - Pending<br>
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Sage-3 - Pending<br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2674720782"><b>Software</b></a><br>
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<b>Using Preinstalled Software</b><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616688641/MedicineBow+Software+List">What's Already Installed?</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2550005761">Load Software: Module System (LMOD)</a><br>
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<b>Install Software (Environments & Kernels)</b><br>
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<a href="uwyo.edu">Installing/Running from Binary - Pending</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615771156">Conda Environments</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2625437711">Importing Jupyter Kernels</a><br>
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<b>Install Software (Other Methods)</b><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2639986719">Compiling Software</a><br>
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Software Imports/Exports Between Systems - Pending<br>
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Containers (AKA:Apptainer) - Pending<br>
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Common Problems - Pending<br>
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</td>
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</tr>
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<tr>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2674720782"><b>Self Paced Training & Workshops</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2185167027/Intro+to+Linux+Command-Line+View+Find+and+Search">Intro to Linux Command Line</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2185167175/Intro+to+HPC">Intro to an ARCC HPC</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2185167098/Intro+to+Text+Editors+in+Linux"> Linux Command-Line Text Editors</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2103312388/Intro+to+Data+Management+with+ARCC">Intro to Data Management</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615771156">Intro to Conda: creating Environments</a><br># UW Advanced Research Computing Center <br> Welcome to the UW ARCC (Advanced Research Computing Center) Wiki
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# UW Advanced Research Computing Center <br> Welcome to the UW ARCC (Advanced Research Computing Center) Wiki
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## How to Stay Connected
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| ... | ... | @@ -305,21 +161,3 @@ The Advanced Research Computing Center is the primary research computing center |
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2686386194"><b>Parallelizing Code: Running Jobs in Parallel</b></a><br>
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</tr>
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</table> |
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\ No newline at end of file |
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2625437711">Intro to Medicinebow: OnDemand - HPC Access from a Browser</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2639986719">CUsing Python, Pip & Conda</a><br>
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</td>
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<td>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554560514"><b>Cluster FileSysem Navigation</b></a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616655873/MedicineBow+Filesystem#Special-Filesystems">Common ARCC Cluster Directories</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2184642658">Linux FileSystem Structure and Navigation</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552201306">GAccess and Move your Files</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2555248879"> Using SCP and SFTP</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656993281/Rclone">Use RSync / RClone</a><br>
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<a href="https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2686386194"><b>Parallelizing Code: Running Jobs in Parallel</b></a><br>
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</tr>
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</table>
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