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ARCC-Get-Started-Docs.md
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......@@ -34,30 +34,30 @@ Links to our primary Quick Start Guides are found directly below. This page also
### [A. Medicinebow: ARCC's Primary HPC Cluster](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2615476240)
[i. Architecture and Hardware Summary](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2611544065)\
[ii. Filesystem Structure](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616655873)\
[iii Software List](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616688641)\
[vi. PBS to Slurm: Command Translation Cheatsheet](https://msi.umn.edu/our-resources/slurm-scheduler/pbs-to-slurm-conversion)\
[v. Get Familiar with Linux Command Line](https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2134540418/Intro+to+Linux+Command-Line+The+File+System#02-Using-the-Terminal)
#### [vi. Logging In](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921)
[Architecture and Hardware Summary](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2611544065)\
[Filesystem Structure](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616655873)\
[Software List](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616688641)\
[PBS to Slurm: Command Translation Cheatsheet](https://msi.umn.edu/our-resources/slurm-scheduler/pbs-to-slurm-conversion)\
[Get Familiar with Linux Command Line](https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2134540418/Intro+to+Linux+Command-Line+The+File+System#02-Using-the-Terminal)
#### [i. Logging In](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921)
[a. Log into Medicinebow from a Web Browser](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921) (**UWYO** User Accounts)\
[b. Log into Medicinebow](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552201217) (**Non-UWYO** User Accounts)\
[c. Configure SSH Logins from your personal device](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841939)\
[d. Configure MobaXTerm (Windows Only)](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2735898625)
#### [vii. HPC Web Applications (On Demand)](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921)
#### [ii. HPC Web Applications (On Demand)](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549841921)
[a. Run an Interactive Job with OnDemand](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2550956040/Running+Interactive+Jobs+with+OnDemand?atlOrigin=eyJpIjoiM2UxZDRlMjIyYjczNGMzYjg0MjFmMmMxY2RkNGFiNjQiLCJwIjoiYyJ9)\
[b. Launch R Studio from OnDemand](https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2189623297)\
[c. Running Jupyter](https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2205646897/Jupyter+with+OnDemand?atlOrigin=eyJpIjoiNGE4Yzc1ZmFkY2EyNGY0MTg2YjIwYWFkYzE2Y2ViODIiLCJwIjoiYyJ9)
#### [iix. Running Jobs: SLURM Job Scheduler](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551578625)
#### [iii. Running Jobs: SLURM Job Scheduler](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551578625)
[a. Submitting Batch Jobs from Command Line](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551578642/Submitting+Batch+Jobs+from+Command+Line?atlOrigin=eyJpIjoiOTMwZThjNDA0NWY1NDIxMzhlMzcwMDIxZTA1NTU2Y2EiLCJwIjoiYyJ9)\
[b. Running Jobs: Batch Script Basics and Common Terms](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2640281601/Running+Jobs+Batch+Script+Basics+and+Common+Terms?atlOrigin=eyJpIjoiOTBkZmM0NDExMzk4NDIyNTkyZDVmZjQ3NTlmN2EwNzQiLCJwIjoiYyJ9)\
[c. Running Interactive Jobs from Command Line (salloc)](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2551709697/Run+Interactive+Jobs+from+Command+Line?atlOrigin=eyJpIjoiOTZlM2NlZjRmYjJhNDM1ZmFkZjUwZDA2NmMzNzRmMzAiLCJwIjoiYyJ9)\
[d. Job Output & Logging](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2556297278)\
#### [ix. Query HPC System & Job Information](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549842497)
#### [iv. Query HPC System & Job Information](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2549842497)
#### [x. Software](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2674720782)
#### [v. Software](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2674720782)
##### Using Preinstalled Software
[a. What's Already Installed?](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616688641/MedicineBow+Software+List?atlOrigin=eyJpIjoiMGQ0MzlmZTc0ZTg2NGVkMWFkMzA4MzRkYjQ3YTEzYjMiLCJwIjoiYyJ9)\
......@@ -71,14 +71,14 @@ Links to our primary Quick Start Guides are found directly below. This page also
[b. Import/Export Software Between Systems]()\
[c. Containers (AKA: Apptainer)]()
#### [xi. Navigating the Cluster Filesystem](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554560514)
#### [vi. Navigating the Cluster Filesystem](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2554560514)
[a. Common ARCC Cluster Directories](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2616655873/MedicineBow+Filesystem#Special-Filesystems)\
[b. Linux FileSystem Structure & Navigation](https://arccwiki.atlassian.net/wiki/spaces/DOCUMENTAT/pages/2184642658)\
[c. Access & Move Your Data](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2552201306)\
[1. With SCP and SFTP](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2555248879)\
[2. With RSync/RClone](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2656993281/Rclone)
#### [xii. Parallelizing Code: Running Jobs in Parallel](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2686386194)
#### [vii. Parallelizing Code: Running Jobs in Parallel](https://arccwiki.atlassian.net/wiki/spaces/ARCC/pages/2686386194)
### [b. AI4Wyoming]()
......